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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
THYM cis rs9309473 1 rs11689392 chr2:73622026 ALMS1P chr2:73872046-73912692:+ 0.57 4.51 1.85E-5 Metabolite levels
THYM cis rs3820928 1 rs11692572 chr2:227774503 RHBDD1 chr2:227700773-227861591:+ -0.31 -4.5 1.93E-5 Pulmonary function
THYM cis rs9976767 1 rs11702374 chr21:43829758 TMPRSS3 chr21:43791996-43816200:- 0.47 4.48 2.07E-5 Type 1 diabetes
THYM cis rs10935120 1 rs11706117 chr3:134212526 ANAPC13 chr3:134196547-134204865:- 0.59 8.13 1.58E-12 Height
THYM cis rs10935120 1 rs11706117 chr3:134212526 CEP63 chr3:134204575-134293852:+ 0.41 5.87 6.33E-8 Height
THYM cis rs10935120 1 rs11708531 chr3:134224902 ANAPC13 chr3:134196547-134204865:- 0.58 8.01 2.88E-12 Height
THYM cis rs10935120 1 rs11708531 chr3:134224902 CEP63 chr3:134204575-134293852:+ 0.41 6.04 2.93E-8 Height
THYM cis rs9876781 1 rs11712561 chr3:48435272 TREX1 chr3:48501186-48509043:+ -0.28 -4.31 4.04E-5 Longevity
THYM cis rs3772130 1 rs11714406 chr3:121372513 IQCB1 chr3:121488610-121553926:- 0.48 4.4 2.85E-5 Cognitive performance
THYM cis rs3772130 1 rs11719458 chr3:121382005 IQCB1 chr3:121488610-121553926:- 0.46 4.27 4.63E-5 Cognitive performance
THYM cis rs3772130 1 rs11721318 chr3:121429485 IQCB1 chr3:121488610-121553926:- 0.45 4.25 5.03E-5 Cognitive performance
THYM cis rs11723261 1 rs11722197 chr4:281707 ZNF718 chr4:53272-156488:+ 0.65 7.31 8.46E-11 Immune response to smallpox vaccine (IL-6)
THYM cis rs11723261 1 rs11722521 chr4:276765 ZNF718 chr4:53272-156488:+ 0.65 7.31 8.46E-11 Immune response to smallpox vaccine (IL-6)
THYM cis rs11723261 1 rs11723261 chr4:282499 ZNF718 chr4:53272-156488:+ 0.65 7.31 8.46E-11 Immune response to smallpox vaccine (IL-6)
THYM cis rs11723261 1 rs11723615 chr4:276983 ZNF718 chr4:53272-156488:+ 0.65 7.31 8.46E-11 Immune response to smallpox vaccine (IL-6)